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kmergenie-software

KmerGenie

KmerGenie estimates the best k-mer length for genome de novo assembly.

Information

Usage

See which versions of kmergenie are available:

$ module avail kmergenie

Load kmergenie

$ module load kmergenie/1.7044

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://kmergenie.bx.psu.edu/kmergenie-1.7044.tar.gz
$ tar xf kmergenie-1.7044.tar.gz
$ cd kmergenie-1.7044
$ sudo mkdir -p /export/apps/kmergenie/1.7044
$ sudo chown aorth /export/apps/kmergenie/1.7044
$ module load python/2.7.8 R/3.3.3
$ make
$ python setup.py install --prefix=/export/apps/kmergenie/1.7044
$ sudo chown -R root:root /export/apps/kmergenie/1.7044
kmergenie-software.txt · Last modified: 2017/05/24 09:57 by aorth