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kmc-software [2018/11/17 23:34] (current)
aorth created
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 +====== KMC ======
 +KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files.
  
 +===== Information =====
 +
 +  * Version: 3.0.0
 +  * Added: November, 2018
 +  * Link: https://​github.com/​refresh-bio/​KMC
 +
 +===== Usage =====
 +
 +See versions of kmc which are available:
 +<​code>​$ module avail kmc</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load kmc/3.0.0
 +$ kmc</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​github.com/​refresh-bio/​KMC/​releases/​download/​v3.0.0/​KMC3.linux.tar.gz
 +$ sudo mkdir -p /​export/​apps/​kmc/​3.0.0
 +$ sudo tar xf KMC3.linux.tar.gz -C /​export/​apps/​kmc/​3.0.0
 +$ sudo chown -R root:root /​export/​apps/​kmc</​code>​
kmc-software.txt · Last modified: 2018/11/17 23:34 by aorth