KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files.
See versions of kmc which are available:
$ module avail kmc
Load one version into your environment and run it:
$ module load kmc/3.0.0 $ kmc
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/refresh-bio/KMC/releases/download/v3.0.0/KMC3.linux.tar.gz $ sudo mkdir -p /export/apps/kmc/3.0.0 $ sudo tar xf KMC3.linux.tar.gz -C /export/apps/kmc/3.0.0 $ sudo chown -R root:root /export/apps/kmc