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kat-software [2017/09/27 14:40]
aorth
kat-software [2017/09/27 14:52] (current)
aorth
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 $ kat --help</​code>​ $ kat --help</​code>​
  
-There are examples for using KAT here: https://​kat.readthedocs.io/​en/​latest/​walkthrough.html+Note that KAT supports gzip-compressed fastq files but you need to use them like this: 
 +<​code>​$ kat comp -t 8 -n <(gunzip -c data_S0_L001_R1_001.fastq.gz) <(gunzip -c data_S0_L001_R2_001.fastq.gz)</​code>​ 
 + 
 +There are more examples for using KAT here: https://​kat.readthedocs.io/​en/​latest/​walkthrough.html
  
 ===== Installation ====== ===== Installation ======
kat-software.txt · Last modified: 2017/09/27 14:52 by aorth