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--- kat-software [2017/09/27 11:35]
aorth created
+++ kat-software [2017/09/27 11:52] (current)
aorth
@@ Line 16: / Line 16: @@
 <code>$ module load kat/2.3.4
 $ kat --help</code>
+Note that KAT supports gzip-compressed fastq files but you need to use them like this:
+<code>$ kat comp -t 8 -n <(gunzip -c data_S0_L001_R1_001.fastq.gz) <(gunzip -c data_S0_L001_R2_001.fastq.gz)</code>
+There are more examples for using KAT here: https://kat.readthedocs.io/en/latest/walkthrough.html
 ===== Installation ======

ILRI Research Computing