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kallisto-software

Kallisto

kallisto is a program for quantifying abundances of transcripts from RNA-Seq data.

Information

Usage

See which versions of kallisto are available:

$ module avail kallisto

Load kallisto

$ module load kallisto/0.42.4

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/pachterlab/kallisto/releases/download/v0.43.0/kallisto_linux-v0.43.0.tar.gz
$ tar -xvf kallisto_linux-v0.43.0.tar.gz
$ cd kallisto_linux-v0.43.0
$ sudo mkdir /export/apps/kallisto/0.43.0/
$ sudo cp -rv . /export/apps/kallisto/0.43.0/
kallisto-software.txt · Last modified: 2016/09/22 15:19 by joguya