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jellyfish-software [2017/03/06 16:24]
joguya [Installation]
jellyfish-software [2018/03/27 17:10] (current)
aorth
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 ====== Jellyfish ====== ====== Jellyfish ======
-Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA+Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
  
 ===== Information ===== ===== Information =====
  
-  * Latest version: 2.2.7+  * Latest version: 2.2.9
   * Added: March, 2015   * Added: March, 2015
-  * Updated: March, ​2017 +  * Updated: March, ​2018 
-  * Link: http://www.genome.umd.edu/jellyfish.html+  * Link: https://github.com/gmarcais/​Jellyfish
  
 ===== Usage ===== ===== Usage =====
- 
 See versions of jellyfish which are available: See versions of jellyfish which are available:
 <​code>​$ module avail jellyfish</​code>​ <​code>​$ module avail jellyfish</​code>​
  
-Load and run jellyfish+Load one version of jellyfish into your environment ​and run it
-<​code>​$ module load jellyfish+<​code>​$ module load jellyfish/2.2.9
 $ jellyfish</​code>​ $ jellyfish</​code>​
  
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp +$ wget https://​github.com/​gmarcais/​Jellyfish/​releases/​download/​v2.2.9/​jellyfish-2.2.9-linux-static 
-$ wget -qO- https://​github.com/​gmarcais/​Jellyfish/​releases/​download/​v2.2.6/​jellyfish-2.2.6.tar.gz | tar xzv +chmod +x jellyfish-2.2.9-linux-static 
-cd jellyfish-2.2.6 +$ sudo mkdir -p /​export/​apps/​jellyfish/​2.2.9/bin 
-$ sudo mkdir /​export/​apps/​jellyfish/​2.2.6 +$ sudo cp jellyfish-2.2.9-linux-static ​/​export/​apps/​jellyfish/​2.2.9/bin/​jellyfish</​code>​
-$ sudo chown -R joguya:​joguya /​export/​apps/​jellyfish/​2.2.+
-$ ./configure CC=clang ​--prefix=/​export/​apps/​jellyfish/​2.2.+
-$ make +
-$ make install +
-$ sudo chown -R root:​root ​/export/apps/jellyfish/2.2.6 +
-</​code>​+
jellyfish-software.txt · Last modified: 2018/03/27 17:10 by aorth