Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA

• Latest version: 2.2.7
• Added: March, 2015
• Updated: March, 2017
• Link: http://www.genome.umd.edu/jellyfish.html

See versions of jellyfish which are available:

$ module avail jellyfish

Load and run jellyfish:

$ module load jellyfish
$ jellyfish

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz | tar xzv
$ cd jellyfish-2.2.6
$ sudo mkdir /export/apps/jellyfish/2.2.6
$ sudo chown -R joguya:joguya /export/apps/jellyfish/2.2.6
$ ./configure CC=clang --prefix=/export/apps/jellyfish/2.2.6
$ make
$ make install
$ sudo chown -R root:root /export/apps/jellyfish/2.2.6