Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA

• Version: 2.2.0
• Added: March, 2015
• Link: http://www.genome.umd.edu/jellyfish.html

$ module avail jellyfish

$ module load jellyfish
$ jellyfish

Notes from the sysadmin during installation:

cd /tmp
wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz
tar -xvf jellyfish-2.2.0.tar.gz
cd jellyfish-2.2.0
sudo mkdir -p /export/apps/jellyfish/2.2.0
sudo chown joguya:joguya /export/apps/jellyfish/2.2.0
scl enable devtoolset-2 bash
./configure CC=clang --prefix=/export/apps/jellyfish/2.2.0
make
make install
sudo chown root:root /export/apps/jellyfish/2.2.0