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jellyfish-software

Jellyfish

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA

Information

Usage

See versions of jellyfish which are available:

$ module avail jellyfish

Load and run jellyfish:

$ module load jellyfish
$ jellyfish

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz | tar xzv
$ cd jellyfish-2.2.6
$ sudo mkdir /export/apps/jellyfish/2.2.6
$ sudo chown -R joguya:joguya /export/apps/jellyfish/2.2.6
$ ./configure CC=clang --prefix=/export/apps/jellyfish/2.2.6
$ make
$ make install
$ sudo chown -R root:root /export/apps/jellyfish/2.2.6
jellyfish-software.txt · Last modified: 2017/03/06 16:24 by joguya