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| + | ====== ivar ====== | ||
| + | iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. | ||
| + | ===== Information ===== | ||
| + | |||
| + | * Version: 1.3 | ||
| + | * Added: January, 2021 | ||
| + | * Link: https:// | ||
| + | |||
| + | ===== Usage ===== | ||
| + | |||
| + | See versions of ivar that are available: | ||
| + | < | ||
| + | |||
| + | Load one version into your environment and run it: | ||
| + | < | ||
| + | $ ivar</ | ||
| + | |||
| + | ===== Installation ====== | ||
| + | Notes from the sysadmin during installation. | ||
| + | |||
| + | < | ||
| + | $ wget https:// | ||
| + | $ tar xf v1.3.tar.gz | ||
| + | $ cd ivar-1.3 | ||
| + | # iVar needs GCC >= 5.0.0, CentOS 7 has 4.8.5 | ||
| + | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-c++ | ||
| + | $ scl enable devtoolset-7 bash | ||
| + | $ ./ | ||
| + | $ module load htslib/1.11 | ||
| + | $ ./configure --with-hts=/ | ||
| + | $ make | ||
| + | $ sudo mkdir -p / | ||
| + | $ sudo chown aorth / | ||
| + | $ make install | ||
| + | $ sudo chown -R root:root / | ||