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ivar-software [2021/01/17 10:14] (current)
aorth created
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 +====== ivar ======
 +iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
  
 +===== Information =====
 +
 +  * Version: 1.3
 +  * Added: January, 2021
 +  * Link: https://andersen-lab.github.io/ivar/html/
 +
 +===== Usage =====
 +
 +See versions of ivar that are available:
 +<code>$ module avail ivar</code>
 +
 +Load one version into your environment and run it:
 +<code>$ module load ivar/1.3
 +$ ivar</code>
 +
 +===== Installation ======
 +Notes from the sysadmin during installation.
 +
 +<code>$ cd /tmp
 +$ wget https://github.com/andersen-lab/ivar/archive/v1.3.tar.gz
 +$ tar xf v1.3.tar.gz
 +$ cd ivar-1.3
 +# iVar needs GCC >= 5.0.0, CentOS 7 has 4.8.5
 +$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-c++
 +$ scl enable devtoolset-7 bash
 +$ ./autogen.sh
 +$ module load htslib/1.11
 +$ ./configure --with-hts=/export/apps/htslib/1.11 --prefix=/export/apps/ivar/1.3
 +$ make
 +$ sudo mkdir -p /export/apps/ivar/1.3
 +$ sudo chown aorth /export/apps/ivar/1.3
 +$ make install
 +$ sudo chown -R root:root /export/apps/ivar/1.3</code>
ivar-software.txt · Last modified: 2021/01/17 10:14 by aorth