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InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains.



$ module avail interproscan


Notes from the sysadmin during installation:

- requirements
$ module load python/2.7.8
$ module load perl

- install interproscan
$ cd /tmp/
$ wget
$ wget
$ md5sum -c interproscan-5.13-52.0-64-bit.tar.gz.md5
$ tar -xvf interproscan-5.13-52.0-64-bit.tar.gz

- install Panther models 
$ cd /tmp/interproscan-5.13-52.0/data
$ wget
$ wget
$ md5sum -c panther-data-9.0.tar.gz.md5
$ tar -xvf panther-data-9.0.tar.gz

$ mkdir /export/apps/interproscan/5.13/
$ mv /tmp/interproscan-5.13-52.0/* /export/apps/interproscan/5.13/

- run tests
$ interactive
$ module load interproscan/5.13
$ -i /export/apps/interproscan/5.13/test_proteins.fasta -f tsv
interproscan-software.1503408900.txt.gz · Last modified: 2017/08/22 16:35 by aorth