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interproscan-software

Interproscan

Information

Usage

Scans a range of protein signatures against your sequence.

$ module avail interproscan

Installation

Notes from the sysadmin during installation:

- requirements
$ module load python/2.7.8
$ module load perl

- install interproscan
$ cd /tmp/
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz.md5
$ md5sum -c interproscan-5.13-52.0-64-bit.tar.gz.md5
$ tar -xvf interproscan-5.13-52.0-64-bit.tar.gz

- install Panther models 
$ cd /tmp/interproscan-5.13-52.0/data
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz
$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz.md5
$ md5sum -c panther-data-9.0.tar.gz.md5
$ tar -xvf panther-data-9.0.tar.gz

$ mkdir /export/apps/interproscan/5.13/
$ mv /tmp/interproscan-5.13-52.0/* /export/apps/interproscan/5.13/

- run tests
$ interactive
$ module load interproscan/5.13
$ interproscan.sh -i /export/apps/interproscan/5.13/test_proteins.fasta -f tsv
interproscan-software.txt · Last modified: 2015/07/02 09:26 by joguya