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igv-software [2017/12/26 09:45]
aorth [Integrative Genomics Viewer(IGV)]
igv-software [2017/12/26 14:55] (current)
aorth
Line 1: Line 1:
 ====== Integrative Genomics Viewer (IGV) ====== ====== Integrative Genomics Viewer (IGV) ======
-Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets +Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 2.3.90+  * Latest Version: 2.4.
 +  * Added: June, 2014
   * Updated: February, 2017   * Updated: February, 2017
-  * Added: June, 2014 
   * Link: https://​software.broadinstitute.org/​software/​igv   * Link: https://​software.broadinstitute.org/​software/​igv
  
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 <​code>​$ module avail igv</​code>​ <​code>​$ module avail igv</​code>​
  
-Load igv +Load one version into your environment and run it: 
-<​code>​$ module load igv/2.3.90</​code>​+<​code>​$ module load igv/2.4.5 
 +$ igv.sh</​code>​
  
 ===== Installation ====== ===== Installation ======
- 
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
-<​code>​ 
-$ cd /tmp 
-$ wget "​http://​data.broadinstitute.org/​igv/​projects/​downloads/​IGV_2.3.90.zip"​ 
-$ unzip IGV_2.3.90.zip ​ 
-$ cd IGV_2.3.90 
-$ ln -s igv.sh igv 
-$ sudo mkdir /​export/​apps/​igv/​2.3.90/​ 
-$ sudo cp -rv . /​export/​apps/​igv/​2.3.90/​ 
-</​code>​ 
  
 +<​code>​$ wget http://​data.broadinstitute.org/​igv/​projects/​downloads/​2.4/​IGV_2.4.5.zip
 +$ sudo mkdir -p /​export/​apps/​igv/​2.4.5
 +$ sudo cp -r IGV_2.4.5/​* ​ /​export/​apps/​igv/​2.4.5
 +$ sudo chmod -x /​export/​apps/​igv/​2.4.5/​igv.{bat,​command}</​code>​
igv-software.1514281533.txt.gz · Last modified: 2017/12/26 09:45 by aorth