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igsimulator-software [2020/03/19 13:33] (current)
aorth created
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 +====== IgSimulator ======
  
 +IgSimulator is a versatile tool for simulation of immunoglobulin repertoire.
 +
 +===== Information =====
 +
 +  * Version: git-c3778b74
 +  * Added: March, 2020
 +  * Link: https://​github.com/​yana-safonova/​ig_simulator
 +
 +===== Usage =====
 +
 +See which versions of igsimulator are available:
 +<​code>​$ module avail igsimulator</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load igsimulator/​git-c3778b74
 +$ ig_simulator.py</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ git clone https://​github.com/​yana-safonova/​ig_simulator.git
 +$ cd ig_simulator
 +$ scl enable devtoolset-7 bash
 +$ make
 +$ sudo mkdir -p /​export/​apps/​igsimulator/​git-c3778b74
 +$ sudo chown aorth /​export/​apps/​igsimulator/​git-c3778b74
 +$ python2 -m virtualenv /​export/​apps/​igsimulator/​git-c3778b74/​venv
 +$ source /​export/​apps/​igsimulator/​git-c3778b74/​venv/​bin/​activate
 +$ pip install --upgrade setuptools pip
 +$ pip install biopython matplotlib
 +$ ./​ig_simulator.py --test
 +$ sudo cp -r * /​export/​apps/​igsimulator/​git-c3778b74
 +$ sudo chown -R root:root /​export/​apps/​igsimulator/​git-c3778b74</​code>​
igsimulator-software.txt · Last modified: 2020/03/19 13:33 by aorth