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igsimulator-software

IgSimulator

IgSimulator is a versatile tool for simulation of immunoglobulin repertoire.

Information

Usage

See which versions of igsimulator are available:

$ module avail igsimulator

Load one version into your environment and run it:

$ module load igsimulator/git-c3778b74
$ ig_simulator.py

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/yana-safonova/ig_simulator.git
$ cd ig_simulator
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/igsimulator/git-c3778b74
$ sudo chown aorth /export/apps/igsimulator/git-c3778b74
$ python2 -m virtualenv /export/apps/igsimulator/git-c3778b74/venv
$ source /export/apps/igsimulator/git-c3778b74/venv/bin/activate
$ pip install --upgrade setuptools pip
$ pip install biopython matplotlib
$ ./ig_simulator.py --test
$ sudo cp -r * /export/apps/igsimulator/git-c3778b74
$ sudo chown -R root:root /export/apps/igsimulator/git-c3778b74
igsimulator-software.txt · Last modified: 2020/03/19 13:33 by aorth