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igrec-software [2017/06/08 16:07] (current)
aorth created
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 +====== IgRepertoireConstructor ======
  
 +IgRepertoireConstructor is a tool for construction of antibody repertoire and immunoproteogenomics analysis
 +
 +===== Information =====
 +
 +  * Version: 3.0.0
 +  * Added: June, 2017
 +  * Link: https://​yana-safonova.github.io/​ig_repertoire_constructor/​
 +
 +===== Usage =====
 +
 +See which versions of igrec are available:
 +<​code>​$ module avail igrec</​code>​
 +
 +Load igrec into your environment:​
 +<​code>​$ module load igrec/​3.0.0</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp 
 +$ git clone https://​github.com/​yana-safonova/​ig_repertoire_constructor.git
 +$ cd ig_repertoire_constructor
 +$ scl enable devtoolset-4 bash
 +$ module load python/​2.7.13
 +$ sudo mkdir -p /​export/​apps/​igrec/​3.0.0
 +$ sudo chown aorth /​export/​apps/​igrec/​3.0.0
 +$ virtualenv /​export/​apps/​igrec/​3.0.0
 +$ . /​export/​apps/​igrec/​3.0.0/​bin/​activate
 +$ pip install numpy
 +$ pip install biopython
 +$ pip install scipy
 +$ pip install matplotlib
 +$ make
 +$ cp -r * /​export/​apps/​igrec/​3.0.0
 +$ sudo chown -R root:root /​export/​apps/​igrec</​code>​
igrec-software.txt · Last modified: 2017/06/08 16:07 by aorth