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igrec-software

IgRepertoireConstructor

IgRepertoireConstructor is a tool for construction of antibody repertoire and immunoproteogenomics analysis

Information

Usage

See which versions of igrec are available:

$ module avail igrec

Load igrec into your environment:

$ module load igrec/3.0.0

Installation

Notes from the sysadmin during installation:

$ cd /tmp 
$ git clone https://github.com/yana-safonova/ig_repertoire_constructor.git
$ cd ig_repertoire_constructor
$ scl enable devtoolset-4 bash
$ module load python/2.7.13
$ sudo mkdir -p /export/apps/igrec/3.0.0
$ sudo chown aorth /export/apps/igrec/3.0.0
$ virtualenv /export/apps/igrec/3.0.0
$ . /export/apps/igrec/3.0.0/bin/activate
$ pip install numpy
$ pip install biopython
$ pip install scipy
$ pip install matplotlib
$ make
$ cp -r * /export/apps/igrec/3.0.0
$ sudo chown -R root:root /export/apps/igrec
igrec-software.txt · Last modified: 2017/06/08 16:07 by aorth