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+ | ====== IgBLAST ====== | ||
+ | IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin variable domain sequences but has recently been extended to perform analysis for T cell receptor (TR) sequences. | ||
+ | |||
+ | ===== Information ===== | ||
+ | |||
+ | * Version: 1.6.0 | ||
+ | * Added: September, 2016 | ||
+ | * Link: https://www.ncbi.nlm.nih.gov/igblast/ | ||
+ | |||
+ | ===== Usage ===== | ||
+ | |||
+ | See which versions of igblast are available: | ||
+ | <code>$ module avail igblast</code> | ||
+ | |||
+ | Load igblast | ||
+ | <code>$ module load igblast/1.6.0</code> | ||
+ | |||
+ | ===== Installation ====== | ||
+ | |||
+ | Notes from the sysadmin during installation: | ||
+ | <code> | ||
+ | $ cd /tmp | ||
+ | $ wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.6.0/ncbi-igblast-1.6.0-src.zip | ||
+ | $ unzip ncbi-igblast-1.6.0-src.zip | ||
+ | $ cd ncbi-igblast-1.6.0-src/c++ | ||
+ | $ sudo mkdir -p /export/apps/igblast/1.6.0/ | ||
+ | $ sudo chown -R joguya:joguya /export/apps/igblast/1.6.0/ | ||
+ | $ scl enable devtoolset-2 bash | ||
+ | $ ./configure --prefix=/export/apps/igblast/1.6.0/ | ||
+ | $ make | ||
+ | $ make install | ||
+ | $ sudo chown -R root:root /export/apps/igblast/1.6.0/ | ||
+ | </code> |