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igblast-software [2016/09/14 12:17] (current)
joguya created
Line 1: Line 1:
 +====== IgBLAST ======
  
 +IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin variable domain sequences but has recently been extended to perform analysis for T cell receptor (TR) sequences.
 +
 +===== Information =====
 +
 +  * Version: 1.6.0
 +  * Added: September, 2016
 +  * Link: https://​www.ncbi.nlm.nih.gov/​igblast/​
 +
 +===== Usage =====
 +
 +See which versions of igblast are available:
 +<​code>​$ module avail igblast</​code>​
 +
 +Load igblast
 +<​code>​$ module load igblast/​1.6.0</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +<​code>​
 +$ cd /tmp
 +$ wget ftp://​ftp.ncbi.nih.gov/​blast/​executables/​igblast/​release/​1.6.0/​ncbi-igblast-1.6.0-src.zip
 +$ unzip ncbi-igblast-1.6.0-src.zip
 +$ cd ncbi-igblast-1.6.0-src/​c++
 +$ sudo mkdir -p /​export/​apps/​igblast/​1.6.0/​
 +$ sudo chown -R joguya:​joguya /​export/​apps/​igblast/​1.6.0/​
 +$ scl enable devtoolset-2 bash
 +$ ./configure --prefix=/​export/​apps/​igblast/​1.6.0/​
 +$ make
 +$ make install
 +$ sudo chown -R root:root /​export/​apps/​igblast/​1.6.0/​
 +</​code>​
igblast-software.txt · Last modified: 2016/09/14 12:17 by joguya