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htslib-software
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htslib-software [2018/06/01 21:52] aorth |
htslib-software [2019/09/04 00:47] (current) aorth |
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| ===== Information ===== | ===== Information ===== | ||
| - | * Latest Version: 1.8 | + | * Latest Version: 1.9 |
| * Added: March, 2015 | * Added: March, 2015 | ||
| - | * Updated: June, 2018 | + | * Updated: September, 2019 |
| * Link: https://github.com/samtools/htslib | * Link: https://github.com/samtools/htslib | ||
| Line 14: | Line 14: | ||
| <code>$ module avail htslib</code> | <code>$ module avail htslib</code> | ||
| - | Load one version into your environment: | + | Load one version into your environment and run some common commands: |
| - | <code>$ module load htslib/1.8</code> | + | <code>$ module load htslib/1.9 |
| + | $ tabix | ||
| + | $ bgzip</code> | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Line 21: | Line 23: | ||
| <code>$ cd /tmp | <code>$ cd /tmp | ||
| - | $ wget https://github.com/samtools/htslib/releases/download/1.8/htslib-1.8.tar.bz2 | + | $ wget https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 |
| - | $ tar xf htslib-1.8.tar.bz2 | + | $ tar xf htslib-1.9.tar.bz2 |
| - | $ cd htslib-1.8 | + | $ cd htslib-1.9 |
| - | $ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.8 | + | # install a newer compiler from Red Hat software collections |
| + | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
| + | $ scl enable devtoolset-7 bash | ||
| + | $ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.9 | ||
| $ make | $ make | ||
| - | $ sudo mkdir /export/apps/htslib/1.8 | + | $ sudo mkdir -p /export/apps/htslib/1.9 |
| - | $ sudo chown aorth:aorth /export/apps/htslib/1.8 | + | $ sudo chown aorth /export/apps/htslib/1.9 |
| $ make install | $ make install | ||
| - | $ sudo chown -R root:root /export/apps/htslib/1.8</code> | + | $ sudo chown -R root:root /export/apps/htslib/1.9</code> |
htslib-software.1527879151.txt.gz · Last modified: 2018/06/01 21:52 by aorth
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