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htslib-software [2017/12/24 15:35]
aorth
htslib-software [2021/01/06 09:16] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.6+  * Latest Version: 1.11
   * Added: March, 2015   * Added: March, 2015
-  * Updated: Оctober2017+  * Updated: January2021
   * Link: https://github.com/samtools/htslib   * Link: https://github.com/samtools/htslib
  
Line 14: Line 14:
 <code>$ module avail htslib</code> <code>$ module avail htslib</code>
  
-Load one version into your environment: +Load one version into your environment and run some common commands
-<code>$ module load htslib/1.6</code>+<code>$ module load htslib/1.11 
 +$ tabix 
 +$ bgzip</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ cd /tmp +<code>$ cd /tmp/ 
-$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2 +$ wget https://github.com/samtools/htslib/releases/download/1.11/htslib-1.11.tar.bz2 
-$ tar xf htslib-1.6.tar.bz2  +$ tar xf htslib-1.11.tar.bz2 
-$ cd htslib-1.6 +$ cd htslib-1.11 
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.6+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.11
 $ make $ make
-$ sudo mv /export/apps/htslib/1.6 /export/apps/htslib/1.6.old +$ sudo mkdir -p /export/apps/htslib/1.11 
-$ sudo mkdir /export/apps/htslib/1.6 +$ sudo chown aorth /export/apps/htslib/1.11
-$ sudo chown aorth /export/apps/htslib/1.6+
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.6</code>+$ sudo chown -R root:root /export/apps/htslib/1.11</code>
htslib-software.1514129720.txt.gz · Last modified: 2017/12/24 15:35 by aorth