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htslib-software [2017/02/05 11:40]
joguya
htslib-software [2021/01/06 09:16] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.3.2+  * Latest Version: 1.11
   * Added: March, 2015   * Added: March, 2015
-  * Updated: February2017+  * Updated: January2021
   * Link: https://github.com/samtools/htslib   * Link: https://github.com/samtools/htslib
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of htslib which are available ===+See versions of htslib which are available:
 <code>$ module avail htslib</code> <code>$ module avail htslib</code>
  
-=== Load and run htslib === +Load one version into your environment and run some common commands: 
-<code>$ module load htslib/1.3.2 </code>+<code>$ module load htslib/1.11 
 +$ tabix 
 +$ bgzip</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>cd /tmp +<code>cd /tmp/ 
-$ wget -qO- "https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2" | tar xjv +$ wget https://github.com/samtools/htslib/releases/download/1.11/htslib-1.11.tar.bz2 
-sudo mkdir /export/apps/htslib/1.3.2/ +tar xf htslib-1.11.tar.bz2 
-sudo chown -R joguya:joguya /export/apps/htslib/1.3.2/ +cd htslib-1.11 
-LD_LIBRARY_PATH=/export/apps/curl/7.47.1/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/curl/7.47.1/lib" CFLAGS="-I/export/apps/curl/7.47.1/include" ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.3.2/+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.11
 $ make $ make
 +$ sudo mkdir -p /export/apps/htslib/1.11
 +$ sudo chown aorth /export/apps/htslib/1.11
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.3.2 +$ sudo chown -R root:root /export/apps/htslib/1.11</code>
-</code>+
htslib-software.1486294858.txt.gz · Last modified: 2017/02/05 11:40 by joguya