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htslib-software

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htslib

htslib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools

Information

Usage

See versions of htslib which are available:

$ module avail htslib

Load one version into your environment:

$ module load htslib/1.8

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/samtools/htslib/releases/download/1.8/htslib-1.8.tar.bz2
$ tar xf htslib-1.8.tar.bz2 
$ cd htslib-1.8
$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.8
$ make
$ sudo mkdir /export/apps/htslib/1.8
$ sudo chown aorth:aorth /export/apps/htslib/1.8
$ make install
$ sudo chown -R root:root /export/apps/htslib/1.8
htslib-software.txt · Last modified: 2018/06/01 21:52 by aorth