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htslib-software

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htslib

htslib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools

Information

Usage

See versions of htslib which are available:

$ module avail htslib

Load one version into your environment:

$ module load htslib/1.6

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2
$ tar xf htslib-1.6.tar.bz2 
$ cd htslib-1.6
$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.6
$ make
$ sudo mv /export/apps/htslib/1.6 /export/apps/htslib/1.6.old
$ sudo mkdir /export/apps/htslib/1.6
$ sudo chown aorth /export/apps/htslib/1.6
$ make install
$ sudo chown -R root:root /export/apps/htslib/1.6
htslib-software.txt · Last modified: 2017/12/24 15:35 by aorth