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hpg-variant-software

HPG Variant

HPG Variant is a tool for fast, memory-efficient counting of k-mers in DNA

Information

Usage

See versions of hpg-variant which are available

$ module avail hpg-variant

Load and run hpg-variant

$ module load hpg-variant
$ hpg-var-effect
$ hpg-var-gwas
$ hpg-var-vcf

Installation

Notes from the sysadmin during installation:

cd /tmp
scl enable devtoolset-2 bash
git clone https://github.com/opencb/hpg-variant.git
git checkout v1.0
git submodule update --init
scons -j4
sudo mkdir -p /export/apps/hpg-variant/1.0
sudo cp -r . /export/apps/hpg-variant/1.0
hpg-variant-software.txt · Last modified: 2015/04/02 16:20 by joguya