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hmmer-software [2017/09/11 14:55] (current)
aorth created
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 +====== HMMER ======
 +HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). ​
  
 +===== Information =====
 +
 +  * Version: 3.1b2
 +  * Added: September, 2017
 +  * Link: http://​hmmer.org
 +
 +===== Usage =====
 +
 +See which versions of hmmer are available:
 +<​code>​$ module avail hmmr</​code>​
 +
 +Load a version of hmmer into your environment:​
 +<​code>​$ module load hmmer/​3.1b2</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget http://​eddylab.org/​software/​hmmer3/​3.1b2/​hmmer-3.1b2-linux-intel-x86_64.tar.gz
 +$ tar xf hmmer-3.1b2-linux-intel-x86_64.tar.gz
 +$ sudo mkdir -p /​export/​apps/​hmmer/​3.1b2/​{bin,​share}
 +$ sudo cp -rv hmmer-3.1b2-linux-intel-x86_64/​binaries/​* /​export/​apps/​hmmer/​3.1b2/​bin
 +$ sudo cp -rv hmmer-3.1b2-linux-intel-x86_64/​share/​* /​export/​apps/​hmmer/​3.1b2/​share</​code>​
hmmer-software.txt · Last modified: 2017/09/11 14:55 by aorth