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hmmer-software

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HMMER

HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

Information

Usage

See which versions of hmmer are available:

$ module avail hmmr

Load a version of hmmer into your environment:

$ module load hmmer/3.1b2

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2-linux-intel-x86_64.tar.gz
$ tar xf hmmer-3.1b2-linux-intel-x86_64.tar.gz
$ sudo mkdir -p /export/apps/hmmer/3.1b2/{bin,share}
$ sudo cp -rv hmmer-3.1b2-linux-intel-x86_64/binaries/* /export/apps/hmmer/3.1b2/bin
$ sudo cp -rv hmmer-3.1b2-linux-intel-x86_64/share/* /export/apps/hmmer/3.1b2/share
hmmer-software.txt · Last modified: 2017/09/11 14:55 by aorth