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hisat2-software [2017/02/05 15:02]
joguya created
hisat2-software [2018/09/27 17:08] (current)
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 2.0.5 +  * Latest Version: 2.1.0 
-  * Added: ​February2017+  * Added: ​September2018
   * Link: http://​ccb.jhu.edu/​software/​hisat2/​index.shtml   * Link: http://​ccb.jhu.edu/​software/​hisat2/​index.shtml
  
 ===== Usage ===== ===== Usage =====
  
-See versions of hisat2 ​which are available:+See available ​versions of hisat2:
 <​code>​$ module avail hisat2</​code>​ <​code>​$ module avail hisat2</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load hisat2/​2.1.0
 +$ hisat2</​code>​
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp +$ wget ftp://​ftp.ccb.jhu.edu/​pub/​infphilo/​hisat2/​downloads/​hisat2-2.1.0-Linux_x86_64.zip 
-$ wget ftp://​ftp.ccb.jhu.edu/​pub/​infphilo/​hisat2/​downloads/​hisat2-2.0.5-Linux_x86_64.zip +$ unzip hisat2-2.1.0-Linux_x86_64.zip 
-$ unzip hisat2-2.0.5-Linux_x86_64.zip  +sudo cp -r hisat2-2.1.0 /​export/​apps/​hisat2/​2.1.0</​code>​
-cd hisat2-2.0.5 +
-$ sudo mkdir -p /​export/​apps/​hisat2/​2.0.5 +
-$ sudo cp -rv . /​export/​apps/​hisat2/​2.0.5/ +
-</​code>​+
hisat2-software.1486296154.txt.gz · Last modified: 2017/02/05 15:02 by joguya