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hisat2-software [2017/02/05 12:02]
joguya created
hisat2-software [2018/09/27 14:08]
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 2.0.5 +  * Latest Version: 2.1.0 
-  * Added: February2017+  * Added: September2018
   * Link: http://ccb.jhu.edu/software/hisat2/index.shtml   * Link: http://ccb.jhu.edu/software/hisat2/index.shtml
  
 ===== Usage ===== ===== Usage =====
  
-See versions of hisat2 which are available:+See available versions of hisat2:
 <code>$ module avail hisat2</code> <code>$ module avail hisat2</code>
 +
 +Load one version into your environment and run it:
 +<code>$ module load hisat2/2.1.0
 +$ hisat2</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ cd /tmp 
-$ cd /tmp +$ wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-Linux_x86_64.zip 
-$ wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.0.5-Linux_x86_64.zip +$ unzip hisat2-2.1.0-Linux_x86_64.zip 
-$ unzip hisat2-2.0.5-Linux_x86_64.zip  +sudo cp -r hisat2-2.1.0 /export/apps/hisat2/2.1.0</code>
-cd hisat2-2.0.5 +
-$ sudo mkdir -p /export/apps/hisat2/2.0.5 +
-$ sudo cp -rv . /export/apps/hisat2/2.0.5/ +
-</code>+
hisat2-software.txt · Last modified: 2018/09/27 14:08 by aorth