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hisat2-software

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HISAT2

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads to a population of human genomes.

Information

Usage

See available versions of hisat2:

$ module avail hisat2

Load one version into your environment and run it:

$ module load hisat2/2.1.0
$ hisat2

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-Linux_x86_64.zip
$ unzip hisat2-2.1.0-Linux_x86_64.zip
$ sudo cp -r hisat2-2.1.0 /export/apps/hisat2/2.1.0
hisat2-software.txt · Last modified: 2018/09/27 17:08 by aorth