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HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.



See versions of htseq which are available:

$ module avail hdf5

Load a particular version:

$ module load hdf5/1.8.15-patch1

List contents of an archive:

$ h5dump -n file_s1_p0.bas.h5

Print referenced datasets:

$ h5dump -d /MultiPart/Parts file_s1_p0.bas.h5


Notes from the sysadmin during installation:

$ cd /tmp
$ wget
$ tar xf hdf5-1.8.15-patch1.tar.gz
$ scl enable devtoolset-2 bash
$ ./configure --prefix=/export/apps/hdf5/1.8.15-patch1
$ sudo mkdir -p /export/apps/hdf5/1.8.15-patch1
$ sudo chown aorth /export/apps/hdf5/1.8.15-patch1
$ make install
$ sudo chown -R root /export/apps/hdf5/1.8.15-patch1
hdf5-software.txt · Last modified: 2015/06/08 12:49 by aorth