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hapflk-software [2017/10/24 14:53] (current)
aorth created
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 +====== hapflk ======
 +hapflk is a software implementing the hapFLK and FLK tests for the detection of selection signatures based on multiple population genotyping data.
  
 +===== Information =====
 +
 +  * Version: 1.4
 +  * Added: October, 2017
 +  * Link: https://​forge-dga.jouy.inra.fr/​projects/​hapflk
 +
 +===== Usage =====
 +
 +See versions of hapflk which are available:
 +<​code>​$ module avail hapflk</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load hapflk/1.4
 +$ hapflk --help</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ sudo mkdir -p /​export/​apps/​hapflk/​1.4
 +$ sudo chown aorth /​export/​apps/​hapflk/​1.4
 +$ module load python/​2.7.13
 +$ python -m virtualenv /​export/​apps/​hapflk/​1.4
 +$ . /​export/​apps/​hapflk/​1.4/​bin/​activate
 +$ pip install numpy scipy
 +$ pip install hapflk
 +$ sudo chown -R root:root /​export/​apps/​hapflk/​1.4</​code>​
hapflk-software.txt · Last modified: 2017/10/24 14:53 by aorth