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hapflk-software

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hapflk

hapflk is a software implementing the hapFLK and FLK tests for the detection of selection signatures based on multiple population genotyping data.

Information

Usage

See versions of hapflk which are available:

$ module avail hapflk

Load one version into your environment and run it:

$ module load hapflk/1.4
$ hapflk --help

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ sudo mkdir -p /export/apps/hapflk/1.4
$ sudo chown aorth /export/apps/hapflk/1.4
$ module load python/2.7.13
$ python -m virtualenv /export/apps/hapflk/1.4
$ . /export/apps/hapflk/1.4/bin/activate
$ pip install numpy scipy
$ pip install hapflk
$ sudo chown -R root:root /export/apps/hapflk/1.4
hapflk-software.txt · Last modified: 2017/10/24 14:53 by aorth