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guidance-software [2016/11/22 22:02] (current)
joguya created
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 +====== Guidance ======
  
 +Guidance is a tool for multiple sequence alignment.
 +
 +===== Information =====
 +
 +  * Latest Version: 2.02
 +  * Added: November, 2016
 +  * Link: http://​guidance.tau.ac.il/​ver2/​
 +  ​
 +===== Usage =====
 +
 +See which versions of guidance are available:
 +<​code>​$ module avail guidance
 +</​code>​
 +
 +Load pagan
 +<​code>​$ module load guidance/​2.02</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +<​code>​
 +$ cd /tmp
 +$ wget http://​guidance.tau.ac.il/​ver2/​guidance.v2.02.tar.gz
 +$ tar -xvf guidance.v2.02.tar.gz ​
 +$ scl enable devtoolset-2 bash
 +$ module load mafft/6.861 clustalw/​2.1 muscle/​3.8.31 pagan/0.61 bioperl/​1.6.923
 +$ cd guidance.v2.02
 +$ make
 +$ find . -type f -iname '​*.pl'​ -exec chmod 0755 {} \;
 +$ sudo mkdir -p /​export/​apps/​guidance/​2.02/​
 +$ sudo rsync -av --exclude='​*.o'​ . /​export/​apps/​guidance/​2.02/​
 +$ find /​export/​apps/​guidance/​2.02/​ -type f -iname '​*.pl'​ -exec sed -i '​s#/​usr/​bin/​perl#/​usr/​bin/​env perl#​g'​ {} \;
 +</​code>​
guidance-software.txt · Last modified: 2016/11/22 22:02 by joguya