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guidance-software

Guidance

Guidance is a tool for multiple sequence alignment.

Information

Usage

See which versions of guidance are available:

$ module avail guidance

Load pagan

$ module load guidance/2.02

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://guidance.tau.ac.il/ver2/guidance.v2.02.tar.gz
$ tar -xvf guidance.v2.02.tar.gz 
$ scl enable devtoolset-2 bash
$ module load mafft/6.861 clustalw/2.1 muscle/3.8.31 pagan/0.61 bioperl/1.6.923
$ cd guidance.v2.02
$ make
$ find . -type f -iname '*.pl' -exec chmod 0755 {} \;
$ sudo mkdir -p /export/apps/guidance/2.02/
$ sudo rsync -av --exclude='*.o' . /export/apps/guidance/2.02/
$ find /export/apps/guidance/2.02/ -type f -iname '*.pl' -exec sed -i 's#/usr/bin/perl#/usr/bin/env perl#g' {} \;
guidance-software.txt · Last modified: 2016/11/22 22:02 by joguya