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graphmap-software

graphmap

A highly sensitive and accurate mapper for long, error-prone reads.

Information

Usage

See versions of graphmap that are available:

$ module avail graphmap

Load one version into your environment and run it:

$ module load graphmap/0.5.2
$ graphmap

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/isovic/graphmap.git
$ cd graphmap
$ make modules
$ sudo yum install libstdc++-static.x86_64
$ make
$ sudo yum remove libstdc++-static.x86_64
$ sudo mkdir -p /export/apps/graphmap/0.5.2
$ sudo cp -r doc LICENCE README.md /export/apps/graphmap/0.5.2
$ sudo mkdir -p /export/apps/graphmap/0.5.2/bin
$ sudo cp bin/Linux-x64/graphmap /export/apps/graphmap/0.5.2/bin
graphmap-software.txt · Last modified: 2018/11/04 19:05 by aorth