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gmap-software [2016/03/24 16:40] (current)
joguya created
Line 1: Line 1:
 +====== GMAP-GSNAP ======
  
 +A Genomic Mapping and Alignment Program(GMAP) for mRNA and EST Sequences and Genomic Short-read Nucleotide Alignment Program(GSNAP).
 +
 +===== Information =====
 +
 +  * Version: 2015-12-31
 +  * Added: March, 2016
 +  * Link: http://​research-pub.gene.com/​gmap/​
 +
 +===== Usage =====
 +
 +See which versions of gmap are available:
 +<​code>​$ module avail gmap
 +</​code>​
 +
 +Load gmap
 +<​code>​$ module load gmap/​2015-12-31</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget http://​research-pub.gene.com/​gmap/​src/​gmap-gsnap-2015-12-31.v9.tar.gz
 +$ tar -xvf gmap-gsnap-2015-12-31.v9.tar.gz
 +$ cd gmap-2015-12-31/​
 +$ scl enable devtoolset-2 bash
 +$ sudo mkdir -p /​export/​apps/​gmap/​2015-12-31
 +$ sudo chown joguya:​joguya /​export/​apps/​gmap/​2015-12-31
 +$ ./configure --prefix=/​export/​apps/​gmap/​2015-12-31
 +$ module load openmpi/​1.8.2
 +$ make
 +$ make install
 +$ sudo chown -R root:root /​export/​apps/​gmap/​2015-12-31
 +</​code>​
gmap-software.txt · Last modified: 2016/03/24 16:40 by joguya