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gatk-software
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gatk-software [2017/02/06 07:50] joguya created |
gatk-software [2018/10/15 13:25] (current) aorth |
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| - | ====== Genome Analysis ToolKit(GATK) ====== | + | ====== Genome Analysis ToolKit (GATK) ====== |
| GATK offers a wide variety of tools with a primary focus on variant discovery and genotyping. | GATK offers a wide variety of tools with a primary focus on variant discovery and genotyping. | ||
| Line 5: | Line 5: | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Latest Version: | + | * Latest Version: |
| - | * Updated: February, 2017 | + | |
| * Added: May, 2014 | * Added: May, 2014 | ||
| + | * Updated: October, 2018 | ||
| * Link: https:// | * Link: https:// | ||
| Line 15: | Line 15: | ||
| < | < | ||
| - | Load gatk | + | Load one version into your environment and run it: |
| - | < | + | < |
| + | $ gatk</ | ||
| ===== Installation ====== | ===== Installation ====== | ||
| - | |||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | ||
| - | $ cd /tmp | ||
| - | $ wget -qO- " | ||
| - | $ sudo mkdir / | ||
| - | $ sudo chown -R joguya: | ||
| - | $ sudo cp -rv GenomeAnalysisTK.jar resources/ / | ||
| - | </ | ||
| - | |||
| - | I created a generic '' | ||
| - | |||
| - | / | ||
| - | |||
| - | readonly PREFIX=$(dirname $0) | ||
| - | |||
| - | java -jar $PREFIX/ | ||
| - | </ | ||
| + | < | ||
| + | $ wget https:// | ||
| + | $ unzip gatk-4.0.10.1.zip | ||
| + | $ sudo cp -r gatk-4.0.10.1 / | ||
gatk-software.1486367444.txt.gz · Last modified: 2017/02/06 07:50 by joguya
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