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gatk-software [2021/09/06 11:36]
aorth
gatk-software [2021/09/16 13:38] (current)
aorth
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 <code>$ module load gatk/4.2.2.0 <code>$ module load gatk/4.2.2.0
 $ gatk</code> $ gatk</code>
 +
 +**Note:** The HaplotypeCaller step can scale to multiple CPUs/threads. Please use the ''-nct'' option to set the number of threads launched by GATK. This number should be the same number of CPUs requested in your SLURM batch job.
  
 ===== Installation ====== ===== Installation ======
gatk-software.txt · Last modified: 2021/09/16 13:38 by aorth