User Tools

Site Tools


gassflow-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

gassflow-software [2017/02/22 17:20] (current)
joguya created
Line 1: Line 1:
 +====== GassFlow ======
 +
 +GassFlow(Genome Annotation based on Species Similarity) is a computational tool to annotate a eukaryotic genome based on only the annotations from another similar species.
 +
 +===== Information =====
 +
 +  * Version: 1.0
 +  * Added: February, 2017
 +  * Link: https://​gassflow.codeplex.com/​
 +
 +===== Usage =====
 +
 +See which versions of gassflow are available:
 +<​code>​$ module avail gassflow</​code>​
 +
 +Load gassflow/​1.0
 +<​code>​$ module load gassflow/​1.0</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget -qO- "​https://​download-codeplex.sec.s-msft.com/​Download/​Release?​ProjectName=gassflow&​DownloadId=1570212&​FileTime=131075185544670000&​Build=21031"​ | tar zxv
 +$ tar -xvf GassFlow_Reference_Based_Version-1.0.tar.gz ​
 +$ sudo cp -v dynamic_results_filter.py GassFlow_Reference.py GassFlow_Refe.sh remove_bad_seq.py remove_duplicate_transcript.py /​export/​apps/​gassflow/​1.0/​
 +</​code>​
  
gassflow-software.txt · Last modified: 2017/02/22 17:20 by joguya