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+ | ====== GapFiller ====== | ||
+ | |||
+ | GapFiller is a stand-alone program for closing gaps within pre-assembled scaffolds. | ||
+ | |||
+ | ===== Information ===== | ||
+ | |||
+ | * Latest Version: 1.10 | ||
+ | * Added: November, 2016 | ||
+ | * Link: https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller | ||
+ | | ||
+ | ===== Usage ===== | ||
+ | |||
+ | See which versions of gapfiller are available: | ||
+ | <code>$ module avail gapfiller | ||
+ | </code> | ||
+ | |||
+ | Load gapfiller | ||
+ | <code>$ module load gapfiller/1.10</code> | ||
+ | |||
+ | ===== Installation ====== | ||
+ | |||
+ | Notes from the sysadmin during installation: | ||
+ | |||
+ | <code> | ||
+ | $ cd /tmp | ||
+ | $ wget https://www.baseclear.com/base/download/39GapFiller_v1-10_linux-x86_64.tar.gz | ||
+ | $ cd GapFiller_v1-10_linux-x86_64 | ||
+ | $ dos2unix GapFiller.pl | ||
+ | $ sudo mkdir -p /export/apps/gapfiller/1.10 | ||
+ | $ sudo cp -r . /export/apps/gapfiller/1.10 | ||
+ | </code> | ||