User Tools
gapfiller-software
Differences
This shows you the differences between two versions of the page.
| — |
gapfiller-software [2016/11/17 10:21] (current) joguya created |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| + | ====== GapFiller ====== | ||
| + | |||
| + | GapFiller is a stand-alone program for closing gaps within pre-assembled scaffolds. | ||
| + | |||
| + | ===== Information ===== | ||
| + | |||
| + | * Latest Version: 1.10 | ||
| + | * Added: November, 2016 | ||
| + | * Link: https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller | ||
| + | | ||
| + | ===== Usage ===== | ||
| + | |||
| + | See which versions of gapfiller are available: | ||
| + | <code>$ module avail gapfiller | ||
| + | </code> | ||
| + | |||
| + | Load gapfiller | ||
| + | <code>$ module load gapfiller/1.10</code> | ||
| + | |||
| + | ===== Installation ====== | ||
| + | |||
| + | Notes from the sysadmin during installation: | ||
| + | |||
| + | <code> | ||
| + | $ cd /tmp | ||
| + | $ wget https://www.baseclear.com/base/download/39GapFiller_v1-10_linux-x86_64.tar.gz | ||
| + | $ cd GapFiller_v1-10_linux-x86_64 | ||
| + | $ dos2unix GapFiller.pl | ||
| + | $ sudo mkdir -p /export/apps/gapfiller/1.10 | ||
| + | $ sudo cp -r . /export/apps/gapfiller/1.10 | ||
| + | </code> | ||
gapfiller-software.txt · Last modified: 2016/11/17 10:21 by joguya
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 4.0 International
