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gapfiller-software [2016/11/17 10:21] (current)
joguya created
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 +====== GapFiller ======
 +
 +GapFiller is a stand-alone program for closing gaps within pre-assembled scaffolds.
 +
 +===== Information =====
 +
 +  * Latest Version: 1.10
 +  * Added: November, 2016
 +  * Link: https://​www.baseclear.com/​genomics/​bioinformatics/​basetools/​gapfiller
 +  ​
 +===== Usage =====
 +
 +See which versions of gapfiller are available:
 +<​code>​$ module avail gapfiller
 +</​code>​
 +
 +Load gapfiller
 +<​code>​$ module load gapfiller/​1.10</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ wget https://​www.baseclear.com/​base/​download/​39GapFiller_v1-10_linux-x86_64.tar.gz
 +$ cd GapFiller_v1-10_linux-x86_64
 +$ dos2unix GapFiller.pl
 +$ sudo mkdir -p /​export/​apps/​gapfiller/​1.10
 +$ sudo cp -r . /​export/​apps/​gapfiller/​1.10
 +</​code>​
  
gapfiller-software.txt · Last modified: 2016/11/17 10:21 by joguya