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gaas

GAAS


GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias.

http://www.ncbi.nlm.nih.gov/pubmed/20011103

Install in:

/paracel/paracel/biosoft/GAAS

Modified it to work with Paracel blast. Make changes in: Makefile.PL

# External GAAS dependency: NCBI BLAST
requires_external_bin 'pb blastall';
requires_external_bin 'pb formatdb';

and

/mnt/export/paracel/biosoft/GAAS/lib/GAAS.pm
gaas.txt · Last modified: 2010/05/22 17:19 (external edit)