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fraggenescan-software [2020/03/15 09:03]
aorth
fraggenescan-software [2020/03/15 09:17] (current)
aorth
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   * Added: July, 2015   * Added: July, 2015
   * Updated: March, 2020   * Updated: March, 2020
-  * Link: http://​omics.informatics.indiana.edu/​FragGeneScan/​+  * Link: https://​omics.informatics.indiana.edu/​FragGeneScan/​
  
 ===== Usage ===== ===== Usage =====
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 <​code>​$ module load fraggenescan/​1.30 <​code>​$ module load fraggenescan/​1.30
-./run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</​code>​+run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</​code>​
  
 **Note:** Please remember to specify the same number of CPU threads as you have requested in your SBATCH job parameters. **Note:** Please remember to specify the same number of CPU threads as you have requested in your SBATCH job parameters.
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 $ make fgs $ make fgs
 $ sudo mkdir -p /​export/​apps/​fraggenescan/​1.30 $ sudo mkdir -p /​export/​apps/​fraggenescan/​1.30
-find . -perm /u+x -print -exec chmod  755 '​{}'​ \;+$ chmod 644 example/* train/* *.h *.c
 $ sudo cp -r . /​export/​apps/​fraggenescan/​1.30 $ sudo cp -r . /​export/​apps/​fraggenescan/​1.30
 </​code>​ </​code>​
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fraggenescan-software.1584263032.txt.gz · Last modified: 2020/03/15 09:03 by aorth