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fraggenescan-software [2015/07/06 12:38] (current)
joguya created
Line 1: Line 1:
 +====== FragGeneScan ======
 +FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. ​
 +
 +===== Information =====
 +
 +  * Version: 1.19
 +  * Added: July, 2015
 +  * Updated: July, 2015
 +  * Link: http://​omics.informatics.indiana.edu/​FragGeneScan/​
 +
 +===== Usage =====
 +
 +See versions of FragGeneScan which are available:
 +<​code>​$ module avail fraggenescan</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +wget "​http://​downloads.sourceforge.net/​project/​fraggenescan/​FragGeneScan1.19.tar.gz?​r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Ffraggenescan%2F&​ts=1436173470&​use_mirror=liquidtelecom"​ -O "​FragGeneScan1.19.tar.gz"​
 +tar -xvf FragGeneScan1.19.tar.gz
 +cd FragGeneScan1.19
 +scl enable devtoolset-2 bash
 +make
 +make fgs
 +sudo mkdir -p /​export/​apps/​fraggenescan/​1.19
 +find . -perm /u+x -print -exec chmod  755 '​{}'​ \;
 +sudo cp -r . /​export/​apps/​fraggenescan/​1.19/​
 +</​code>​
  
fraggenescan-software.txt · Last modified: 2015/07/06 12:38 by joguya