FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

• Version: 1.19
• Added: July, 2015
• Updated: July, 2015
• Link: http://omics.informatics.indiana.edu/FragGeneScan/

See versions of FragGeneScan which are available:

$ module avail fraggenescan

Notes from the sysadmin during installation:

wget "http://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.19.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Ffraggenescan%2F&ts=1436173470&use_mirror=liquidtelecom" -O "FragGeneScan1.19.tar.gz"
tar -xvf FragGeneScan1.19.tar.gz
cd FragGeneScan1.19
scl enable devtoolset-2 bash
make
make fgs
sudo mkdir -p /export/apps/fraggenescan/1.19
find . -perm /u+x -print -exec chmod  755 '{}' \;
sudo cp -r . /export/apps/fraggenescan/1.19/