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fraggenescan-software

FragGeneScan

FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

Information

Usage

See versions of FragGeneScan which are available:

$ module avail fraggenescan

Installation

Notes from the sysadmin during installation:

wget "http://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.19.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Ffraggenescan%2F&ts=1436173470&use_mirror=liquidtelecom" -O "FragGeneScan1.19.tar.gz"
tar -xvf FragGeneScan1.19.tar.gz
cd FragGeneScan1.19
scl enable devtoolset-2 bash
make
make fgs
sudo mkdir -p /export/apps/fraggenescan/1.19
find . -perm /u+x -print -exec chmod  755 '{}' \;
sudo cp -r . /export/apps/fraggenescan/1.19/
fraggenescan-software.txt · Last modified: 2015/07/06 12:38 by joguya