FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.
See versions of FragGeneScan which are available:
$ module avail fraggenescan
Notes from the sysadmin during installation:
wget "http://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.19.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Ffraggenescan%2F&ts=1436173470&use_mirror=liquidtelecom" -O "FragGeneScan1.19.tar.gz" tar -xvf FragGeneScan1.19.tar.gz cd FragGeneScan1.19 scl enable devtoolset-2 bash make make fgs sudo mkdir -p /export/apps/fraggenescan/1.19 find . -perm /u+x -print -exec chmod 755 '{}' \; sudo cp -r . /export/apps/fraggenescan/1.19/