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flexbar-software [2016/05/16 16:02] (current)
joguya created
Line 1: Line 1:
 +====== Flexbar ======
  
 +flexbar is a flexible barcode and adapter processing for next-generation sequencing platforms.
 +
 +===== Information =====
 +
 +  * Version: 2.7.0
 +  * Added: May, 2016
 +  * Link: https://​github.com/​seqan/​flexbar
 +
 +===== Usage =====
 +
 +See which versions of flexbar are available:
 +<​code>​$ module avail flexbar
 +</​code>​
 +
 +Load flexbar
 +<​code>​$ module load flexbar/​2.7.0</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​
 +$ cd /tmp
 +$ scl enable devtoolset-2 bash
 +$ wget https://​github.com/​seqan/​flexbar/​archive/​v2.7.0.tar.gz
 +$ tar -xvf v2.7.0.tar.gz ​
 +$ cd flexbar-2.7.0/​
 +$ wget https://​github.com/​seqan/​seqan/​releases/​download/​seqan-v2.1.1/​seqan-library-2.1.1.zip
 +$ unzip seqan-library-2.1.1.zip
 +$ echo "​include_directories( /​tmp/​flexbar-2.7.0/​seqan-library-2.1.1/​include )" >> CMakeLists.txt
 +$ sudo yum install tbb-devel.x86_64
 +$ cmake .
 +$ make
 +$ sudo mkdir -p /​export/​apps/​flexbar/​2.7.0
 +$ sudo cp flexbar /​export/​apps/​flexbar/​2.7.0
 +</​code>​
flexbar-software.txt · Last modified: 2016/05/16 16:02 by joguya