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flexbar-software

Flexbar

flexbar is a flexible barcode and adapter processing for next-generation sequencing platforms.

Information

Usage

See which versions of flexbar are available:

$ module avail flexbar

Load flexbar

$ module load flexbar/2.7.0

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ scl enable devtoolset-2 bash
$ wget https://github.com/seqan/flexbar/archive/v2.7.0.tar.gz
$ tar -xvf v2.7.0.tar.gz 
$ cd flexbar-2.7.0/
$ wget https://github.com/seqan/seqan/releases/download/seqan-v2.1.1/seqan-library-2.1.1.zip
$ unzip seqan-library-2.1.1.zip
$ echo "include_directories( /tmp/flexbar-2.7.0/seqan-library-2.1.1/include )" >> CMakeLists.txt
$ sudo yum install tbb-devel.x86_64
$ cmake .
$ make
$ sudo mkdir -p /export/apps/flexbar/2.7.0
$ sudo cp flexbar /export/apps/flexbar/2.7.0
flexbar-software.txt · Last modified: 2016/05/16 16:02 by joguya