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flash2-software [2017/09/20 16:31] (current)
aorth created
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 +====== FLASH2 ======
 +FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies.
 +===== Information =====
 +  * Version: git-64826f45
 +  * Added: September, 2017
 +  * Link: https://​​dstreett/​FLASH2
 +=== Usage ===
 +Show all available versions of flash2:
 +<​code>​$ module avail flash2</​code>​
 +Load flash into your environment:​
 +<​code>​$ module load flash2/​git-64826f45</​code>​
 +Get quick help:
 +<​code>​$ flash2 --help</​code>​
 +=== Installation ===
 +Notes from the system admin during installation.
 +<​code>​$ cd /tmp
 +$ git clone https://​​dstreett/​FLASH2.git
 +$ scl enable devtoolset-4 bash
 +$ make
 +$ sudo mkdir -p /​export/​apps/​flash2/​git-64826f45/​bin
 +$ sudo cp flash2 /​export/​apps/​flash2/​git-64826f45/​bin</​code>​
flash2-software.txt · Last modified: 2017/09/20 16:31 by aorth