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flapjack-software [2017/07/26 13:43]
aorth
flapjack-software [2018/04/24 07:46] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 1.17.07.26+  * Version: 1.18.04.23-beta
   * Added: July, 2017   * Added: July, 2017
 +  * Updated: April, 2018
   * Link: https://ics.hutton.ac.uk/flapjack/   * Link: https://ics.hutton.ac.uk/flapjack/
  
Line 14: Line 15:
  
 Load and run flapjack: Load and run flapjack:
-<code>$ module load flapjack/1.17.07.26+<code>$ module load flapjack/1.18.04.23-beta
 $ flapjack</code> $ flapjack</code>
  
Line 23: Line 24:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget http://bioinf.hutton.ac.uk/flapjack/installers/flapjack_linux_x64_1_16_10_31.sh +$ wget http://bioinf.hutton.ac.uk/flapjack/gobii-beta/milcah/flapjack_linux_x64_1_18_04_23-BETA.sh 
-$ chmod +x flapjack_linux_x64_1_16_10_31.sh +$ chmod +x flapjack_linux_x64_1_18_04_23-BETA.sh 
-$ ./flapjack_linux_x64_1_16_10_31.sh -c -dir /tmp/flapjack +$ sudo mkdir -p /export/apps/flapjack/1.18.04.23-beta 
-$ sudo mkdir -p /export/apps/flapjack/1.16.10.31 +$ sudo chown aorth /export/apps/flapjack/1.18.04.23-beta 
-$ sudo cp flapjack/lib//export/apps/flapjack/1.16.10.31 +$ ./flapjack_linux_x64_1_18_04_23-BETA.sh -c -dir 
-$ sudo chown -R root:root /export/apps/flapjack/1.16.10.31</code> +$ sudo chown -R root:root /export/apps/flapjack/1.18.04.23-beta</code>
- +
-I created simple wrapper scripts for ''flapjack'' and its other command line programs, as they must otherwise be run with ''java -jar ..'' or ''java -cp ..'' and is rather user-unfriendly. +
- +
-/export/apps/flapjack/1.16.10.31/flapjack: +
-<code>#!/usr/bin/env bash +
- +
-readonly PREFIX=$(dirname $0) +
- +
-java -jar $PREFIX/flapjack.jar "$@"</code>+
flapjack-software.1501076621.txt.gz · Last modified: 2017/07/26 13:43 by aorth