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--- fasttree-software [2020/08/09 12:47]
aorth
+++ fasttree-software [2020/08/09 12:52] (current)
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@@ Line 17: / Line 17: @@
 <code>$ module load fasttree/2.1.11
 $ FastTree</code>
+*Note:* if you're using the multi-threaded ''FastTreeMP'' please specify the number of CPU threads to use with the ''OMP_NUM_THREADS'' environment variable:
+<code>$ export OMP_NUM_THREADS=3
+$ FastTreeMP</code>
+The number of CPU threads you choose should match the number of CPUs requested in your SLURM SBATCH allocation.
 ===== Installation ======
@@ Line 24: / Line 31: @@
 <code>$ sudo mkdir -p /export/apps/fasttree/2.1.11/bin
 $ sudo wget http://www.microbesonline.org/fasttree/FastTree -O /export/apps/fasttree/2.1.11/bin/FastTree
-$ sudo chmod +x /export/apps/fasttree/2.1.11/bin/FastTree</code>
+$ sudo wget http://meta.microbesonline.org/fasttree/FastTreeMP -O /export/apps/fasttree/2.1.11/bin/FastTreeMP
+$ sudo chmod +x /export/apps/fasttree/2.1.11/bin/FastTree*</code>

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